PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00053.9
Common NameAMTR_s00053p00025460, LOC18433179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 324aa    MW: 35125.6 Da    PI: 5.8
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00053.9genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30152210259
                                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                             +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp v++itY++eHnh+
  evm_27.model.AmTr_v1.0_scaffold00053.9 152 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRSDPGVFVITYTSEHNHP 210
                                             69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-31141212IPR003657WRKY domain
PROSITE profilePS5081133.614146212IPR003657WRKY domain
SuperFamilySSF1182902.48E-26149212IPR003657WRKY domain
SMARTSM007741.9E-37151211IPR003657WRKY domain
PfamPF031061.5E-25153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MERGGGGLCY WASSADDWDL QAVVRGCTSE RVPRHPWFDG GAISIESSST STTTTAALLV  60
DQAVNGDCDG DFLSAFPDLV SSLPAMELEE SYKPFYSNNS SCEAPLLQKQ KQKQARGLSV  120
SGASHTHLRR SKRSKSQLRR VVCQVPAEGL PSDMWAWRKY GQKPIKGSPY PRGYYRCSSS  180
KGCSARKQVE RSRSDPGVFV ITYTSEHNHP LPTHRNSLAG STRNKPEASP TPADTTTSSQ  240
PPPTHNHPKP ASSPPHLSPT TPLNMAANSN DLQKHQDEEE DEEGEVEEDD LFLELEELGQ  300
SGGGGATASA FAETFVGDFP WLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A2e-181502121677Probable WRKY transcription factor 4
1wj2_A2e-181502121677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843337.10.0PREDICTED: WRKY transcription factor 22
TrEMBLW1P5320.0W1P532_AMBTC; Uncharacterized protein
STRINGGSMUA_Achr10P22020_0014e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-49WRKY family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]